Glyma13g35610 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g35610

Feature Type:	gene_model
Chromosome:	Gm13
Start:	37034990
stop:	37037909
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g35610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16430	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 10 \| chr2:7120502-7122772 REVERSE LENGTH=468	SoyBase	E_val: 0	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G0T438	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatases n=1 Tax=Glycine max RepID=G0T438_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1M3C5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3C5_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma13g35610

Locus	Gene Symbol	Protein Name
	PAP26	Purple acid phosphatase 26 gene
	PAP26	Purple acid phosphatase gene 26

Expression Patterns of Glyma13g35610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g35610

Paralog	Evidence	Comments
Glyma12g34960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g35610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g280500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g35610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g35610

Limit To All Plant Sequences

>Glyma13g35610.1   sequence type=CDS   gene model=Glyma13g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTGCAAAGAGTTGCTCTTGTTTTGCTACAATATCTGTGGCATTGGTTTTGCTCCTTCTTCCGAATGTGGCTGTGGTTTGCCATGGAGGCAAGACAAGCACTTTCATCAGAAAGGTTGAGAAGACTGAGGACATGCCGCTTCATAGTGATGTATTTGTTTCCCCTTCAGGCTATAATGCTCCTCAGCAGGTTCATATAACACTAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGGGTGACTCTGGACGAACCAGGAAAGAGTCTAGTGCATTACTGGAGTGATGACTGCCCGCACAAGAGGGTGGCCAAGGGAAATCATTTCACCTATAGATACTTCAATTATTCTTCTGGTTTTATTCATCACTGCACCCTTAGAGATTTAGAGTTTAACACAAAATATTATTATGAGGTTGGAATTGGGCATACTACCAGGCAATTTTGGTTTGTGACCCCTCCTGAAGTTCACCCTGATACGCCTTATACATTTGGTCTCATTGGTGATCTGGGTCAAACTTTTGATTCAAACAAGACCCTTGCTCACTATGAATCAAACCCTCACAAAGGGCAAGCTGTGTTGTATGTTGGAGACCTCTCTTATGCAGATAATTACCCAAATCATGACAATGTTAGGTGGGATACATGGGGAAGATTCGTAGAAAGAAGTACTGCTTATCAACCTTGGATATGGACTACAGGGAACCATGAACTTGACTATGCTCCTGAAATTGATGAAACAGAACCTTTCAAGCCTTTCCGCCACCGTTATCACGTTCCTTACCAAGCATCGGGAAGTACTGAACCCTTTTGGTATTCTATCAAGATAGCTTCTGCACACATCATAGTTTTGGCTTCATATTCAGCTTATGGCAAATATACTCCCCAATATGAATGGCTTGAGGCAGAGCTACCAAAGGTTGATAGAACCAAGACCCCTTGGTTGATTGTTCTTGTGCACTCTCCATGGTATAATAGTTACAGCTATCATTACATGGAAGGTGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTATAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTGAACGAATCTCCAACATTGGATACAACATTACGAATGGTCGATGCGGGCCTTCGAAGGACCAGTCAGCTCCTGTATACATAAACATTGGTGATGGAGGGAACATTGAAGGCTTAGCAAGGAACATGACAAATCCACAACCTGAGTATTCTGCATACAGAGAAGCAAGTTTCGGGCATGCAATTTTGGAAATAAAGAACAGAACACATGCTCATTATAGCTGGCACCGAAATGAAGATGAATATGCTGTTACAGCTGATTCCATGTGGTTTTTCAACAGACACTGGCATCCTGTTGATGATTCCACCACAACCAAGTGA

Predicted protein sequences of Glyma13g35610

Limit To All Plant Sequences

>Glyma13g35610.1   sequence type=predicted peptide   gene model=Glyma13g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGAKSCSCFATISVALVLLLLPNVAVVCHGGKTSTFIRKVEKTEDMPLHSDVFVSPSGYNAPQQVHITLGDQVGRAMIVSWVTLDEPGKSLVHYWSDDCPHKRVAKGNHFTYRYFNYSSGFIHHCTLRDLEFNTKYYYEVGIGHTTRQFWFVTPPEVHPDTPYTFGLIGDLGQTFDSNKTLAHYESNPHKGQAVLYVGDLSYADNYPNHDNVRWDTWGRFVERSTAYQPWIWTTGNHELDYAPEIDETEPFKPFRHRYHVPYQASGSTEPFWYSIKIASAHIIVLASYSAYGKYTPQYEWLEAELPKVDRTKTPWLIVLVHSPWYNSYSYHYMEGETMRVMFEPWFVKYKVDVVFAGHVHAYERSERISNIGYNITNGRCGPSKDQSAPVYINIGDGGNIEGLARNMTNPQPEYSAYREASFGHAILEIKNRTHAHYSWHRNEDEYAVTADSMWFFNRHWHPVDDSTTTK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain